PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012242P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 311aa    MW: 34858.1 Da    PI: 4.499
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012242P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.6e-18110157152
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkk 52 
                     s+y+GVr+++ +g+W+AeIrd + +   r r++lg+++taeeA +a++  r++
  MELO3C012242P1 110 SKYRGVRQRS-WGKWAAEIRDpF-K---RSRVWLGTYDTAEEASQAYESRRLQ 157
                     89*****999.**********55.3...5******************876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-12110160IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-16110158IPR016177DNA-binding domain
CDDcd000182.36E-23111151No hitNo description
PROSITE profilePS5103219.981111168IPR001471AP2/ERF domain
SMARTSM003801.7E-18111174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-22111163IPR001471AP2/ERF domain
PRINTSPR003679.3E-11112123IPR001471AP2/ERF domain
PRINTSPR003679.3E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSYSPNQRSV SGSRKSNVLP NKFSADPRMR RKLRIICYDP DATDSSSSED EGETYARKFN  60
RIVHEIHLPP LKKSLQSESS QNSNNENKNP KFKQSKALFK NPSSRRPSSS KYRGVRQRSW  120
GKWAAEIRDP FKRSRVWLGT YDTAEEASQA YESRRLQFEA MAAEMAIEEE GKMSGSSSTP  180
VFSESTAETT VSHTSPSSVL EWADSTVQSH DLKEGTESIK EETDSNMNYL QEGDPGNPFI  240
DEINMGIDFD SILADGIGMF LEDFASFDDT QILGLADDEP SGRLPSWDFE DFGNDDISCW  300
LDDSINITCS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-131101741378Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12733RMRRKLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446593.10.0PREDICTED: ethylene-responsive transcription factor ERF118
RefseqXP_008446594.10.0PREDICTED: ethylene-responsive transcription factor ERF118
RefseqXP_016900183.10.0PREDICTED: ethylene-responsive transcription factor ERF118
TrEMBLA0A1S4DW400.0A0A1S4DW40_CUCME; ethylene-responsive transcription factor ERF118
STRINGXP_008446593.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-26ERF family protein