PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011947P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 343aa    MW: 38175.4 Da    PI: 7.1595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011947P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-1958107255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +gr++AeIrdp++   + r +lg+f+taeeAa+a++ a+++++g
  MELO3C011947P1  58 RYRGVRRRP-WGRYAAEIRDPNS---KERRWLGTFDTAEEAARAYDCAARAMRG 107
                     59*******.**********832...4999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-1358107IPR001471AP2/ERF domain
PROSITE profilePS5103222.74858115IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2158115IPR016177DNA-binding domain
SMARTSM003808.5E-3558121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-3058114IPR001471AP2/ERF domain
CDDcd000186.13E-3258114No hitNo description
PRINTSPR003673.8E-105970IPR001471AP2/ERF domain
PRINTSPR003673.8E-108197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEEALRRLNG LPITASHFDD AVSSPNNHRK KSTASANSST AHTDRRIPRD GATSGAMRYR  60
GVRRRPWGRY AAEIRDPNSK ERRWLGTFDT AEEAARAYDC AARAMRGLKA RTNFVYPSTP  120
SSPHSLSDQL LSPLNFAKQS QISRHLATSS NWSAFSNAHT FDYPEHASHQ KINPPPSFLN  180
MLLPPHDIQN PNFVSSAPQF THVDCQYQCP KSSFTSLPIE KDDFLPDSEF IPKEPSSSGL  240
LEEIINGFFP KTLNKTQHPQ SSNDMSISSE TNFGYSVVDQ QPGLSFNYQS GPVQAADHQE  300
MSFVNGLPTN VQMGMESGNL IMENLLQYPE FFNAYVAKIQ NA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-2051114971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446161.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA0A1S3BEE20.0A0A1S3BEE2_CUCME; ethylene-responsive transcription factor ESR2-like
STRINGXP_008446161.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.18e-21DORNROSCHEN-like