PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011572P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 320aa    MW: 35545.4 Da    PI: 4.2646
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011572P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-19120170155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GVr++k +g+W+AeIrd +     + +r++lg++ taeeA +a++  r+++e 
  MELO3C011572P1 120 SQYRGVRQRK-WGKWAAEIRDpF-----KgARIWLGTYNTAEEASQAYESKRLEFET 170
                     78*******9.**********55.....45***********************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-12120170IPR001471AP2/ERF domain
CDDcd000187.18E-24120168No hitNo description
SuperFamilySSF541714.12E-17120169IPR016177DNA-binding domain
SMARTSM003805.5E-17121175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-22121173IPR001471AP2/ERF domain
PROSITE profilePS5103219.493121183IPR001471AP2/ERF domain
PRINTSPR003672.5E-10122133IPR001471AP2/ERF domain
PRINTSPR003672.5E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MPEPRLLQLT NQKSFGKKSK SRTEDLKMTR KIRVICNDPD ATDSSSSEDE GEVQTKSLKL  60
KRIVREIHLP LFPSHSSKSM DVTTSTPSSS QDSNNGGKNL ELKKKRVLGT KTLSTRRSAS  120
QYRGVRQRKW GKWAAEIRDP FKGARIWLGT YNTAEEASQA YESKRLEFET AMAAAPKSSS  180
NIVITSSSSS SEENEEESDS VVSQTFPAAA IIEMETSSSA LIKEDEEEVI DTNLINELQV  240
PDLGFVDEGM EINLGLPELD QFFMDDIGQF LDDFSAMDDI QIYGFDDDVP SCLPDCDFDD  300
FGNDDISCWV DEALNVPCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-15121162244ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818170.0LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445662.10.0PREDICTED: ethylene-responsive transcription factor ERF118
TrEMBLA0A1S3BD920.0A0A1S3BD92_CUCME; ethylene-responsive transcription factor ERF118
STRINGXP_008445662.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-37ERF family protein