PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 230aa MW: 24842.4 Da PI: 5.9465

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C011143P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.7	6.1e-18	42	91	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f ++e+Aa+a++ a+++++g MELO3C011143P1 42 VYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 91 69**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	9.2E-34	42	105	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.4E-31	42	100	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.209	42	99	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.9E-21	42	100	IPR016177	DNA-binding domain
Pfam	PF00847	2.7E-12	42	91	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.7E-10	43	54	IPR001471	AP2/ERF domain
CDD	cd00018	4.54E-31	43	101	No hit	No description
PRINTS	PR00367	8.7E-10	65	81	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSSSKEQSPS PETESSSSSS SDSNKKPKRI NSNSSSNSKH AVYRGVRMRN WGKWVSEIRE 60 PRKKSRIWLG TFPSPEMAAR AHDVAALSIK GNSAILNFPD LVHLLPRPVS LAPRDVQAAA 120 AKAAHMHNLS SNANTNNHNT NSNSSSAFSD ELSEIVELPA LGTSYDGGVG VGGEFVFVES 180 ELESAAWLYQ PPWVQSLQED YDDIDGDGDC GKLGMGFVSN GFKGFLFDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-18	38	99	10	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB125974	0.0	AB125974.1 Cucumis melo CMe-DREB1 mRNA for DREB-like protein, complete cds.
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001306241.1	1e-168	ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	7e-64	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	Q75UJ6	1e-167	Q75UJ6_CUCME; DREB-like protein
STRING	XP_008445017.1	1e-168	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	2e-48	ERF family protein

Link Out ? help Back to Top
Entrez Gene	103488184

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]