PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C010811P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 326aa MW: 35824.6 Da PI: 4.9224 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.6 | 1.4e-10 | 249 | 289 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq MELO3C010811P1 249 RKRRERINERLRILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 289 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.046 | 239 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.72E-14 | 239 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-12 | 244 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-11 | 245 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.59E-12 | 248 | 293 | No hit | No description |
Pfam | PF00010 | 7.8E-8 | 249 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MEALGVFSDG EWESFAAMFS SEEINQTHIP MTNCCSSELH QLPNNGGSSS SWFYSLDAFV 60 PNLQSYCKQD IRSCSSASVL IPNSSDFFMP IDERNFGSEF FSDVLIEEVD NALAVDAEGD 120 DSGMGRLIEN NVSQSNHPPP SPLLDSAGAG NKPIALKRKV NNGDISDNQK KKTRITSHGQ 180 RKKKTEDKRR GESAEEEGQS SISYNSDQEE NGSEEANGGG SGATSDGGIN RKSRASRGSA 240 TDPQSLYARK RRERINERLR ILQKLVPNGT KVDISTMLEE AVHYVKFLQL QIKLLSSDEM 300 WMFAPLAYNG MDIGLQHNLS PFLSH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 182 | KKKTRITSHGQRKK |
2 | 169 | 183 | KKKTRITSHGQRKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 0.0 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008444563.1 | 0.0 | PREDICTED: putative transcription factor bHLH086 | ||||
TrEMBL | A0A1S3BAK3 | 0.0 | A0A1S3BAK3_CUCME; putative transcription factor bHLH086 | ||||
STRING | XP_008444563.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31401 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27740.1 | 1e-39 | root hair defective 6-like 4 |