PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010555P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 302aa    MW: 33074 Da    PI: 7.6758
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010555P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.94.7e-412312229129
             NAM  29 eleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvm 123
                     + ++ + evd++k+ePwd+pk +  + kewyfFs+rd+kyatg r+nrat+sgyWkatgkd++v++k ++lvg++ktLvfy+grapkg+kt+Wvm
  MELO3C010555P1  23 SSSSLLIEVDLNKCEPWDIPK-ACVGGKEWYFFSQRDRKYATGLRTNRATASGYWKATGKDRPVFHKANQLVGMRKTLVFYQGRAPKGRKTEWVM 116
                     33456889************4.345789******************************************************************* PP

             NAM 124 heyrle 129
                     he+rle
  MELO3C010555P1 117 HEFRLE 122
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.931145IPR003441NAC domain
SuperFamilySSF1019412.09E-4426145IPR003441NAC domain
PfamPF023657.4E-1738121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKKIGSDSSS SSSSSSSSSS SSSSSSLLIE VDLNKCEPWD IPKACVGGKE WYFFSQRDRK  60
YATGLRTNRA TASGYWKATG KDRPVFHKAN QLVGMRKTLV FYQGRAPKGR KTEWVMHEFR  120
LEGPFSPITD PSPKEDWVLC RLFCKQKEVT PQPSTGSSSC YNDIIASSSS LPALMDSYIS  180
FDQNPSSHLN EYEQVPCFSI FSQNQTIPTL TSLMQMEANT GNNIKNFSTM FGGGMPNSTT  240
CSSNIDPFAC DSKVLKVLNN ITKMETNGTS FIGQPSMGEG SSDSYLSEVG VADDIASLWN  300
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-382414645166NO APICAL MERISTEM PROTEIN
1ut4_B2e-382414645166NO APICAL MERISTEM PROTEIN
1ut7_A2e-382414645166NO APICAL MERISTEM PROTEIN
1ut7_B2e-382414645166NO APICAL MERISTEM PROTEIN
3swm_A2e-382414648169NAC domain-containing protein 19
3swm_B2e-382414648169NAC domain-containing protein 19
3swm_C2e-382414648169NAC domain-containing protein 19
3swm_D2e-382414648169NAC domain-containing protein 19
3swp_A2e-382414648169NAC domain-containing protein 19
3swp_B2e-382414648169NAC domain-containing protein 19
3swp_C2e-382414648169NAC domain-containing protein 19
3swp_D2e-382414648169NAC domain-containing protein 19
4dul_A2e-382414645166NAC domain-containing protein 19
4dul_B2e-382414645166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818670.0LN681867.1 Cucumis melo genomic scaffold, anchoredscaffold00013.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444276.10.0PREDICTED: NAC domain-containing protein 21/22-like isoform X2
SwissprotQ84TE64e-88NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A1S3B9Z40.0A0A1S3B9Z4_CUCME; NAC domain-containing protein 21/22-like isoform X2
STRINGXP_008444276.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100103241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.27e-90NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]