PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010195P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 366aa    MW: 41416 Da    PI: 7.5562
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010195P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-1542101155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  MELO3C010195P1  42 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 101
                     57*******************999955656446*************************98 PP
2AP251.23.1e-16144195155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  MELO3C010195P1 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDIAAIEYRG 195
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1742110IPR016177DNA-binding domain
PfamPF008479.0E-1242101IPR001471AP2/ERF domain
PROSITE profilePS5103220.11243109IPR001471AP2/ERF domain
SMARTSM003801.4E-2643115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1643110IPR001471AP2/ERF domain
PRINTSPR003674.9E-64455IPR001471AP2/ERF domain
CDDcd000183.37E-24144205No hitNo description
SuperFamilySSF541711.31E-17144205IPR016177DNA-binding domain
PfamPF008471.7E-11144195IPR001471AP2/ERF domain
PROSITE profilePS5103218.386145203IPR001471AP2/ERF domain
SMARTSM003803.4E-25145209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17145204IPR001471AP2/ERF domain
PRINTSPR003674.9E-6185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAKSTAQQVQ IRESNGNNVV MKTKTKRTRR SVPRDSPPQR SSIYRGVTRH RWTGRYEAHL  60
WDKNCWNESQ NKKGRQVYLG AYDDEEAAAH AYDLAALKYW GQETILNFPL TTYQKELKDM  120
EGQSREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE  180
EAATAYDIAA IEYRGLNAVT NFDLSRYIKW LKPSNDVVYD NNRILTVDSI LPSPKQELDL  240
ALFPSDQNQS STDSATPEPI ALPPSHRSTT STTNTTTTTT SALGLLLQSS KFKEMMEMNS  300
AAECPSTPSS SEQLEQRRCL FPDDVQTFFA CETSGSYCYG EADDAMFSDF NSFVPPPLSH  360
YDFVD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818080.0LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443823.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-114AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S3B9P00.0A0A1S3B9P0_CUCME; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_008443823.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-104ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]