PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010035P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 364aa    MW: 39278.4 Da    PI: 8.6652
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010035P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07326125
                    --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                    yk   Cr+f+r G C+yG+ CkF H
  MELO3C010035P2  3 YKKQHCRNFQR-GSCQYGEGCKFLH 26
                    77888******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.09E-5229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-7328IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-5326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MHYKKQHCRN FQRGSCQYGE GCKFLHATQQ APQQKPNPFG FGVPNNGQSK AVADFGSKQN  60
QFKPFENKWT RPSTPTGNAQ SRKPDNHLPS SNHKCTDGES CKRQIAEDFQ NERPLWKLTC  120
YGHNKNEPCD IVGDVSYEEL RTIAYDEAKR GISLQSIVER ERNLLNSKLA EFEGLLHKPY  180
VTPSNRAPGN QSSFSGTNSP SILPSAQNNT PSLSSFSQLG ASLNTGFGAR PSNSPNTVFG  240
QQFQFSSPVQ NSSGFGMTNF PSTSVVAVGG AVGSQTFGNL STPSGFNNNG IANAGSNIFS  300
SATLTNLPPM NANSSASGQI APNAQLVNKL QQENSSVDVG IWMKEKWVPG EIPEMAPPDA  360
VVQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818081e-118LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132561e-118LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443667.10.0PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1
SwissprotQ9FWS32e-75C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A1S3B9C90.0A0A1S3B9C9_CUCME; zinc finger CCCH domain-containing protein 16 isoform X1
STRINGXP_008443667.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.22e-74C3H family protein