PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009441P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 184aa    MW: 20009.2 Da    PI: 4.8514
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009441P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.7e-18959155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr++  +g+Wv+eIr+p+    +  r++lg+f tae+Aa a++ a+++l+g
  MELO3C009441P1  9 PVYRGVRRRN-TGKWVSEIREPR----KpNRIWLGTFPTAEMAAVAYDVAALALKG 59
                    68*****887.9*********94....478***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-11959IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-301069IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-211069IPR016177DNA-binding domain
SMARTSM003809.5E-331073IPR001471AP2/ERF domain
PROSITE profilePS5103222.8271067IPR001471AP2/ERF domain
CDDcd000182.35E-291169No hitNo description
PRINTSPR003671.1E-81122IPR001471AP2/ERF domain
PRINTSPR003671.1E-83349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MASSSGRHPV YRGVRRRNTG KWVSEIREPR KPNRIWLGTF PTAEMAAVAY DVAALALKGQ  60
DTELNFPNSA SSLPIPASRS PSDIQAAAAS AAAALGAAAA AMEARNNSGS RRGSHSDDVV  120
YEARYGQEYE LESQFMDEDL IFDMPNVLMN MAEGMLLSPP RFNNHGGDED RDFGTDQNLW  180
NFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-168681273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442806.11e-133PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR02e-58ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A1S3B6341e-131A0A1S3B634_CUCME; ethylene-responsive transcription factor ERF024-like
STRINGXP_008442806.11e-132(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.14e-44ERF family protein