PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C009378P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 250aa MW: 27322.6 Da PI: 7.4201 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00063 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H MELO3C009378P1 89 YQCKTCDRCFPSFQALGGHRASH 111 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00014 | 169 | 191 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H MELO3C009378P1 169 HECSICGAEFSSGQALGGHMRRH 191 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.86E-9 | 89 | 111 | No hit | No description |
SMART | SM00355 | 0.077 | 89 | 111 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.847 | 89 | 116 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.2E-10 | 89 | 113 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.86E-9 | 164 | 191 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.5E-4 | 167 | 191 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.1E-13 | 168 | 192 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 169 | 191 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.743 | 169 | 191 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 171 | 191 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MAETPDENQA QIIKGKRTKR LRPSSVSSTS SSADCSSSSA GLTEEEEEDQ DLANCLILLA 60 QGRSRITEGC SSVFVEQKLV AANESLFLYQ CKTCDRCFPS FQALGGHRAS HKKPKFFNNV 120 IANSVEQQQQ QQENNFTTSN SIQLSLQLST ASRPPPPPTA GDLIKSKVHE CSICGAEFSS 180 GQALGGHMRR HRTLTATTTR PITTSTPQFI KKERNMLELD LNLPAPEDDR HRPPVAVFST 240 ASPLVDCHY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008442730.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A1S3B5W6 | 0.0 | A0A1S3B5W6_CUCME; zinc finger protein ZAT5-like | ||||
STRING | XP_008442730.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-40 | C2H2 family protein |