PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009307P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 364aa    MW: 40873.8 Da    PI: 6.6652
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009307P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-17159208155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  MELO3C009307P1 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 208
                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.45E-12159217No hitNo description
SuperFamilySSF541716.54E-16159217IPR016177DNA-binding domain
PfamPF008472.1E-9159208IPR001471AP2/ERF domain
PROSITE profilePS5103217.754160216IPR001471AP2/ERF domain
SMARTSM003802.6E-31160222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-17160216IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-6251295IPR016177DNA-binding domain
CDDcd000186.45E-13251296No hitNo description
SMARTSM003808.4E-11252300IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MLDLNLEVVS SESASDSVEM VTDRFMQFSA NRMESAGSFN SSSVVNGDLS ASTTGDEDSS  60
SNADEAFPFT FGKDYADQES LTAKSLCVFD DHRDQTMELF PLTGGLSSGS SPLERCPEVS  120
PSEFSYCGGA PERRIPAPPT QQQHQPMKKN RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHAAARAYD RAAIKFRGID ADINFNVCDY DEDIKQMSNF TKEEFVHILR  240
RHRTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKAYDKA ALRCNGKEAV TNFEPSSYVA  300
EMASETDIGG LFLLCLYNLL FDHCHFVVLV LNDLVWSTGL HLMISIQYRK LSLFPLCREQ  360
PNY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442633.10.0PREDICTED: floral homeotic protein APETALA 2-like
SwissprotQ9SK038e-84RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S3B6530.0A0A1S3B653_CUCME; floral homeotic protein APETALA 2-like
STRINGXP_008442633.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-79related to AP2.7