PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C008548P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 291aa MW: 32829 Da PI: 6.7388

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C008548P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.6	4.4e-31	22	76	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLH+rFveav+ LGG++kAtPk+++++m++ gL+l+h+kSHLQkYRl MELO3C008548P1 22 KPRLKWTHELHQRFVEAVNYLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRL 76 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.6E-29	20	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.17E-16	21	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-22	22	77	IPR006447	Myb domain, plants
Pfam	PF00249	4.9E-7	24	75	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-19	118	165	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MQNHHHHQQQ PHMNLVLSTD AKPRLKWTHE LHQRFVEAVN YLGGADKATP KSLMRVMGIT 60 GLSLYHLKSH LQKYRLGKSQ QAETNAQVKL QEMQKKSGHF DGEENKDRTQ NQNKTENMKI 120 SEALEMQLQV QKRLQEQIEV QKHLQLKIEA QGKYLKIVLR KAQETIAGYG CCSEALEEAK 180 AELSQLASMV SSGCQSSCLS ELTDSTELSF KGTERVGSGR RMCSIESSLT SSETSEEAPT 240 TKKRKGNGKE KEKEESSSVC EEEEEEEEEL RMMDLNDTAI GFGSKLIQFL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	21	80	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	21	80	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-19	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	22	78	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	21	80	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	21	80	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	21	80	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	21	80	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	21	80	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	21	80	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681846	0.0	LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008441712.1	0.0	PREDICTED: myb family transcription factor APL
Swissprot	F4I274	3e-69	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A1S3B431	0.0	A0A1S3B431_CUCME; myb family transcription factor APL
STRING	XP_008441712.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5218	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.2	5e-64	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]