PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008166P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 314aa    MW: 34877 Da    PI: 6.7826
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008166P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.88.8e-14247271226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ +++ G C+yG+ C+FaHg
  MELO3C008166P1 247 KTELCNKWQEIGDCPYGNHCRFAHG 271
                     9***********************9 PP
2zf-CCCH17.76.2e-06284309126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt  Cr  +++  C+yG rC+F H+
  MELO3C008166P1 284 YKTQMCRMVLAGQKCPYGHRCHFRHS 309
                     9**********99**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.2E-16241278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-10243277IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7245272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817245273IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10247271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8279312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-13279312IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-4283310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835283311IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEEEMCPPLL PSSLSSTTEL SVAEFEDFSQ HFASMYHSIF PPLLSSSSLP NSLSFTPSPS  60
SADDDHNNHC TTATATSTTD DLLVQARLIL ENRHLRHRHD LCLRRLRQVS DDADYLRQEN  120
AQLRLANAEL VKVISSKTAI DDLVSIPNSH LRSLIGGGQS GDEIGYNDII SPTSVIGKYN  180
DQFDGRNNLH RISLPKSISI RSAAAAASSA PPNIKLRGAC TPVSDGGSRK REEEATEFEV  240
YNQGTTKTEL CNKWQEIGDC PYGNHCRFAH GLEELRPVMR HPRYKTQMCR MVLAGQKCPY  300
GHRCHFRHSL SEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-18247312570Butyrate response factor 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195106RHRHDLCLRRLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441302.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_008441303.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9F58e-57C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A1S3B3V90.0A0A1S3B3V9_CUCME; zinc finger CCCH domain-containing protein 14-like
STRINGXP_008441301.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.27e-49C3H family protein