PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007752P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 377aa    MW: 41881.2 Da    PI: 6.2708
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007752P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.82.4e-07154175223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+r  nL+ H+r H
  MELO3C007752P1 154 FCEICGKGFKRDANLRMHMRAH 175
                     6*******************99 PP
2zf-C2H212.10.00058241264123
                     EEETTTT.EEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                     ++C+ C+ ksFs   +Lk+H++ +
  MELO3C007752P1 241 FSCNRCNkKSFSVMADLKSHLKHC 264
                     89*******************977 PP
3zf-C2H211.30.0011273288621
                     TTEEESSHHHHHHHHH CS
         zf-C2H2   6 CgksFsrksnLkrHir 21 
                     Cg++Fsrk+ L  H+ 
  MELO3C007752P1 273 CGTTFSRKDKLFGHMA 288
                     **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.32E-6150176No hitNo description
PROSITE profilePS5015711.967153180IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-5153175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015153175IPR015880Zinc finger, C2H2-like
PfamPF128740.0021154173No hitNo description
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
SMARTSM00355100203236IPR015880Zinc finger, C2H2-like
SMARTSM0035518241263IPR015880Zinc finger, C2H2-like
SMARTSM00355210269293IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MNPPTFPIQF SGDPLPASTI IGSGDPRIPL QNLSTIRSSM DALQSFLSHN IHREVRISNQ  60
QMDAVSSEIF TAIQQIIVNG AALLTCAQSK TPTPPDLTAS TTRTQPNSVT EKSMAELKVE  120
GVDEITITES EESDPDWEVV ELDAMELLAE HIHFCEICGK GFKRDANLRM HMRAHGNQFK  180
TPEALAKPLD DVGADHRAKR TRFSCPYDGC VRNKMHKKFR ALKSLICVKN HFKRSHCPKM  240
FSCNRCNKKS FSVMADLKSH LKHCGESKWR CSCGTTFSRK DKLFGHMALF EGHMPAVPDD  300
ACATVATTTS EMDEDGDSNQ ISKDVNLQNG SNVSSDDGSF ESFLDGFGLI ENQSLQEVLG  360
FPYDFDSESE WKFRGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440589.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A1S3B2300.0A0A1S3B230_CUCME; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRINGXP_008440589.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.23e-83C2H2 family protein