PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C007680P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 277aa MW: 31701.2 Da PI: 6.6709 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 95 | 141 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++ErrRR++i++ f L l+P + K +Ka++L A+eY+k+Lq MELO3C007680P1 95 EHVIAERRRREKIRQNFIALSALIPGL-----IKRDKASVLGGAIEYVKELQ 141 6999**********************9.....69*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.342 | 91 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-15 | 94 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-16 | 94 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-9 | 95 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.74E-11 | 96 | 145 | No hit | No description |
SMART | SM00353 | 6.1E-12 | 97 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 277 aa Download sequence Send to blast |
MMECSYEYER MKKCPHDYTL DELNFPAKEK VNNLRSSSQL VSFGDYSGEI ENYKFDNYGN 60 LIGSGEKGHE IKKDYCSTII MGQLPNRNRN HNNSEHVIAE RRRREKIRQN FIALSALIPG 120 LIKRDKASVL GGAIEYVKEL QERLKWAEEE AEKQKSVIKS VVFVKRINLD SDDSENETFS 180 LDENGDRSSV RSVPTIEIRV LEKDVMVRIH CKKRQGCYTS ILSQIEKLKL TILNSCVSPF 240 GESRLDITIV AEMEAGFCMT PMDVGKNLRE TLVEFI* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 99 | 104 | ERRRRE |
2 | 100 | 105 | RRRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681875 | 0.0 | LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007. | |||
GenBank | LN713262 | 0.0 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008440468.1 | 0.0 | PREDICTED: transcription factor bHLH25-like | ||||
Refseq | XP_008440469.1 | 0.0 | PREDICTED: transcription factor bHLH25-like | ||||
TrEMBL | A0A1S3B1X4 | 0.0 | A0A1S3B1X4_CUCME; transcription factor bHLH25-like | ||||
STRING | XP_008440468.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24693 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-49 | bHLH family protein |