PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007309P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 665aa    MW: 73827 Da    PI: 6.6342
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007309P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.8e-19110209198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpkk+ae++  +++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++
  MELO3C007309P1 110 FEKMLSASDAGRIGRLVLPKKCAEAYfpSISQPEGLPLKVQDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGK 202
                     89**************************666677788***************9989999999***9.********************766.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  MELO3C007309P1 203 LVMGFRK 209
                     7777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-30106213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-19107209IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-21108209No hitNo description
PfamPF023626.5E-16110209IPR003340B3 DNA binding domain
SMARTSM010191.6E-20110211IPR003340B3 DNA binding domain
PROSITE profilePS5086311.35110211IPR003340B3 DNA binding domain
PROSITE profilePS5105014.138343393IPR011124Zinc finger, CW-type
PfamPF074961.3E-11348390IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MPKQSSFVKE DSSTMQYGLN IPYAPPNEPS ARGRISGTHL RPTPLSSLPK QIHTNLQNGA  60
DSNETQLRNG RPRGESRGKN YLLPRYWPRF TDQELQQISV DSNSVITPLF EKMLSASDAG  120
RIGRLVLPKK CAEAYFPSIS QPEGLPLKVQ DAKGKEWIFQ FRFWPNNNSR MYVLEGVTPC  180
IQSMQLQAGD TVTFSRLEPE GKLVMGFRKA SATADQENET NKTKNGAPVQ GDVSNIKVKA  240
ELADPTSWTK VDKSGYIAKE VLGAKPSISR KRKNSTLGSK SKRLRIDNED MIELKITWEE  300
AQGLLRPPPN QVPNILVIEG FEFEEYEEAP VLGKPSIIPP DNTGERIQWT QCEDCLKWRK  360
LPASALLPSK WTCSDNSWEP ERSFCSAPQE LSTEQLEELL SPVAPVKKMK AAKLEPDNVE  420
ALEGLDTLAN LAILGEGEAS QTPGQATTKH PRHRPGCSCI VCIQPPSGKG PKHKQTCTCN  480
VCLTVKRRFR TLMLRREKKQ FEKEAETTRQ RNQFLDEMFP DRSMDDESLT CSNTSTSKLI  540
EEGKMNDGSD EDPNRNKPST SPFKGQIDLN MQPEREDELS PGSDSGSMMK MLQDTGDRFL  600
EQQRSNSGGT RSSSSDPLEP GGEREHKGES SSNVIDRSSN NLDVDKDHPA TLSLNPSASM  660
SATG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-65882172131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439895.20.0PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1S3AZU40.0A0A1S3AZU4_CUCME; LOW QUALITY PROTEIN: B3 domain-containing protein Os07g0563300-like
STRINGXP_008439895.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-152HSI2-like 1