PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007181P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MIKC_MADS
Protein Properties Length: 263aa    MW: 30279.4 Da    PI: 10.223
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007181P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.7e-315099150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  MELO3C007181P3 50 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 99
                    79***********************************************8 PP
2K-box112.83.4e-371182144100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s++ s++ea+++ +qqe+akL+ +i nLq+++R++lGe+L+sL+ k+L+ Le++Lek++++iRskKnell+++ie+++++e +l+++n++Lr+k+
  MELO3C007181P3 118 SNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLTAKDLKGLETKLEKGISRIRSKKNELLFAEIEYMRRREIDLHNNNQMLRAKI 212
                     3444499***************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  MELO3C007181P3 213 AE 214
                     86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.13242102IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-4242101IPR002100Transcription factor, MADS-box
CDDcd002653.05E-4543119No hitNo description
SuperFamilySSF554551.7E-3343117IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-334464IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004498IPR002100Transcription factor, MADS-box
PfamPF003191.0E-265198IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-336479IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-3379100IPR002100Transcription factor, MADS-box
PfamPF014865.5E-28125212IPR002487Transcription factor, K-box
PROSITE profilePS5129714.921128218IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSKHYQSPLT RMIKEEGKGK LQIKGMFQNQ EEKMSDSPQR KMGRGKIEIK RIENTTNRQV  60
TFCKRRNGLL KKAYELSVLC DAEVALIVFS SRGRLYEYAN NSVKATIDRY KKASSDSSNT  120
GSTSEANTQF YQQEAAKLRV QIGNLQNSNR NMLGESLSSL TAKDLKGLET KLEKGISRIR  180
SKKNELLFAE IEYMRRREID LHNNNQMLRA KIAESERNVN MMGGEFELMQ SHPYDPRDFF  240
QVNGLQHNHQ YPRQDNMALQ LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-2142114173Myocyte-specific enhancer factor 2B
1tqe_Q4e-2142114173Myocyte-specific enhancer factor 2B
1tqe_R4e-2142114173Myocyte-specific enhancer factor 2B
1tqe_S4e-2142114173Myocyte-specific enhancer factor 2B
6c9l_A4e-2142114173Myocyte-specific enhancer factor 2B
6c9l_B4e-2142114173Myocyte-specific enhancer factor 2B
6c9l_C4e-2142114173Myocyte-specific enhancer factor 2B
6c9l_D4e-2142114173Myocyte-specific enhancer factor 2B
6c9l_E4e-2142114173Myocyte-specific enhancer factor 2B
6c9l_F4e-2142114173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0354380.0AF035438.1 Cucumis sativus MADS box protein CUM1 (CUM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439700.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X1
SwissprotQ435851e-126AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLA0A1S3AZC20.0A0A1S3AZC2_CUCME; floral homeotic protein AGAMOUS isoform X1
STRINGXP_008439700.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-106MIKC_MADS family protein
Publications ? help Back to Top
  1. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]