PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006510P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CPP
Protein Properties Length: 789aa    MW: 85409.7 Da    PI: 5.218
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006510P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.73.4e-16491529240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  MELO3C006510P1 491 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 529
                     689**********************************96 PP
2TCR50.54e-16576614139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  MELO3C006510P1 576 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 614
                     589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-18490531IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.095491616IPR005172CRC domain
PfamPF036381.1E-11493528IPR005172CRC domain
SMARTSM011144.4E-17576617IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11578614IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MDTPERNQIG ATSVSKFEDS PVFNYINNLS PIQPVKSIHT SQTFNSLSFA SLPSVFTSPH  60
ASSYKESRFL RRHSISDLSK PDFSTEDGSK VETDRGATGN VAELQDDSSA PDGKSDSLSN  120
PSTELPSERP VSTNEEPQAS KSDSSHPDCD QKLPDSVLKS GEDPALSDSC VKNKSGNESS  180
EAEENKQVIN HTEEREGTGY DWESLITEGA DLLIFSSPNG SEAIRLVQKP LDLVTGFASS  240
TLSQIMENDN ANLSKMRIAD PIECSGGQHE IEFLSSQAGE ACELKDMDQG MDSLSFPNSS  300
NSVSREITDD EVARYIADDC KPASNLYRGM RRRCLDFEAA VSRRKNLEDT SNGGSVSTHP  360
EEKTASMDKQ LVPYKSGGVA TRCVLTGIGL HLNALATTSK DAKNLNHEKF SSERQLNLPN  420
SSASCHSPSG GLDPLLTSAV TERDMDPSGN GVQNEEDGAR ASAYVLAEDF NQNSPKKKRR  480
RLEPAGETES SCKRCNCKKS KCLKLYCECF AAGVYCIEPC SCQDCFNKPI HEDTVLATRK  540
QIESRNPLAF APKVIRNSDS LPEPGDESNK TPASARHKRG CNCKKSSCLK KYCECYQGGV  600
GCSISCRCEG CKNAFGRKDG SSILGLEAEL EEEETETNPK SVMDKGLQGP EIQNNEEQNP  660
GSAIPSTPLQ LSRQLVPLPF SSRSKPLRSS FLNVGSSSGF YGGHKLEKPN ILRAQPDLGI  720
NTKPVSEDEM PDILRGECSP GAGVKTGSPN SKRISPPQSD FGLSPLPRTG RKLILQSIPS  780
FPSLTPQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1749561314120Protein lin-54 homolog
5fd3_B5e-1749561314120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1474481PKKKRRRL
2475480KKKRRR
3477481KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438631.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLA0A1S3AXI70.0A0A1S3AXI7_CUCME; protein tesmin/TSO1-like CXC 2
STRINGXP_008438631.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-107TESMIN/TSO1-like CXC 2