PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C005466P1

Common Name

CMe-ERF1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 166aa MW: 19063.1 Da PI: 9.3999

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C005466P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.4	1.5e-17	82	132	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdps k r++lg+f++ +Aa+a++ a+ k++g MELO3C005466P1 82 RYRGVRRRP-WGKFAAEIRDPSR--KGSRVWLGTFDSDVDAARAYDSAAFKIRG 132 7******.******854..34******99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.3E-31	82	141	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.526	82	140	IPR001471	AP2/ERF domain
SMART	SM00380	6.3E-37	82	146	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.09E-22	82	141	IPR016177	DNA-binding domain
Pfam	PF00847	1.6E-12	82	132	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.0E-13	83	94	IPR001471	AP2/ERF domain
CDD	cd00018	6.08E-24	90	140	No hit	No description
PRINTS	PR00367	2.0E-13	122	142	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MELPVEEDND DEFSPLNLIR YHLLQDSHSF STLRDFGFKL EFEDFEYVKP SEEEEEEPPI 60 QSPKRHPERQ SPRSSSPDGG RRYRGVRRRP WGKFAAEIRD PSRKGSRVWL GTFDSDVDAA 120 RAYDSAAFKI RGRKAKLNFP LDAGKSDPPP GNGRKKKRRE TNLNA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-26	80	141	3	64	ATERF1
3gcc_A	2e-26	80	141	3	64	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	158	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB125975	0.0	AB125975.1 Cucumis melo CMe-ERF1 mRNA for ERF-like protein, complete cds.
GenBank	LN681895	0.0	LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008436978.1	1e-117	PREDICTED: ethylene-responsive transcription factor ERF106-like
Swissprot	Q9LY05	1e-40	EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBL	A0A1S3ASX7	1e-116	A0A1S3ASX7_CUCME; ethylene-responsive transcription factor ERF106-like
STRING	XP_008436978.1	1e-117	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5257	30	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07580.1	4e-36	ERF family protein

Publications ? help Back to Top
Kim H,Go YS,Suh MC DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves. Plant Cell Physiol., 2018. 59(5): p. 966-977 [PMID:29425344]