PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C005281P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 473aa MW: 52157.1 Da PI: 5.9353 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00018 | 123 | 145 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg+s+++ ++ H ++ MELO3C005281P1 123 FECPICGRSYRSEEEVSEHVDSC 145 89************999998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.10.20.90 | 5.3E-10 | 24 | 52 | No hit | No description |
SMART | SM00734 | 3.9E-4 | 122 | 146 | IPR006642 | Zinc finger, Rad18-type putative |
PROSITE profile | PS50157 | 9.162 | 123 | 154 | IPR007087 | Zinc finger, C2H2 |
CDD | cd09212 | 2.00E-19 | 170 | 243 | No hit | No description |
SuperFamily | SSF143503 | 3.66E-17 | 182 | 258 | IPR018997 | PUB domain |
Pfam | PF09409 | 2.4E-16 | 183 | 254 | IPR018997 | PUB domain |
SMART | SM00580 | 1.9E-16 | 183 | 250 | IPR018997 | PUB domain |
SuperFamily | SSF54236 | 4.91E-15 | 324 | 436 | IPR029071 | Ubiquitin-related domain |
Gene3D | G3DSA:3.10.20.90 | 5.3E-10 | 340 | 434 | No hit | No description |
SMART | SM00166 | 0.0011 | 349 | 438 | IPR001012 | UBX domain |
PROSITE profile | PS50033 | 12.794 | 352 | 436 | IPR001012 | UBX domain |
Pfam | PF00789 | 8.8E-7 | 353 | 434 | IPR001012 | UBX domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MGDVKDKVKG FMKRFNNTLS SSSSTSFKGQ GRVLGSSSSG STSSLPTRPS ENPISKPKLV 60 SPPSNFSANS NPPVANSIAT GQNRSDPSNK SNPDRKRADG FDPFDSFITS GKRSGNGYSL 120 NVFECPICGR SYRSEEEVSE HVDSCVNVST AKGPEDPPTS DAESRSELEA CIGTFLAGKP 180 SQGSLDIVLK LLRNIVREPE NSKFRKIRLS NPKIKEAIGE AVGGVELLEF VGFKLQEEDG 240 EMWATMEVPT EEQIHLLNKV IDSIDRPKLE EQQEKASTAP ELIEPKKVDR QIRVFFAVPE 300 NIAANIELPD SFYTLSVEEV KREAIMRKKK IAESQLLVPK SYKEKQAKAA RRKYTRTVIR 360 IQFPDGVVLQ GVFSPWEPTN TLYEFVSTAL KEPCLEFELI HPVGVKRRTI AHFPAEEDKS 420 KTLDDEELVP SALVKFRPIE TDSVVFTGLR NELLEIIEPL VSGSAVAPPT QV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ifs_A | 5e-13 | 303 | 436 | 19 | 146 | Tether containing UBX domain for GLUT4 |
5ifs_C | 5e-13 | 303 | 436 | 19 | 146 | Tether containing UBX domain for GLUT4 |
5ifw_A | 2e-13 | 307 | 436 | 23 | 146 | Tether containing UBX domain for GLUT4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008467106.1 | 0.0 | PREDICTED: plant UBX domain-containing protein 2 | ||||
Swissprot | Q9ZU93 | 1e-179 | PUX2_ARATH; Plant UBX domain-containing protein 2 | ||||
TrEMBL | A0A1S3CSR1 | 0.0 | A0A1S3CSR1_CUCME; plant UBX domain-containing protein 2 | ||||
STRING | XP_008467106.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8944 | 25 | 29 |
Publications ? help Back to Top | |||
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