PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004604P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 467aa    MW: 51853.9 Da    PI: 7.151
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004604P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.93.4e-35521991128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 
                     lp+G++F+Ptd+el+ e+L++kve+k+       ++++  +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+         
  MELO3C004604P1  52 LPAGVKFDPTDQELI-EHLEAKVEAKHdmkshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdfqg 144
                     799************.99*******9976665443333333766646**********.555666799******************8677777777 PP

             NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  MELO3C004604P1 145 gggGGETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 199
                     66644778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3847218IPR003441NAC domain
PROSITE profilePS5100532.21852218IPR003441NAC domain
PfamPF023658.2E-1653199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MTTSMASTKS NLGSITSSDL IDAKLEEHQK CGSKQCPGCG HKLEAKPDWL GLPAGVKFDP  60
TDQELIEHLE AKVEAKHDMK SHPLIDEFIP TIEGEDGICY THPEKLPGVT RDGLSRHFFH  120
RPSKAYTTGT RKRRKIQTEC DFQGGGGGGE TRWHKTGKTR PVMVNGRQKG CKKILVLYTN  180
FGKNRKPEKT NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCSWSSSD KPVSVGVSPE  240
LSGDNLVLSS RRESGSGSCS SSREMTTGQR DEMSSVGGGG GSGLCPPPHI TAATYAGLDH  300
IQQFKADHFS FGPFRRTFDE PGIGEASTTR EAPPTEDIGD HRNHHHHLQR QHHHPMVTTA  360
FQITRPSNPI STIICPPPLH HSSIILDHDS YRVSPLMLQS ESFQQQQQEQ HHKLGGRSAS  420
GLEELIMGCT SSNIKEESTM GNNPQEAAEW MKYSPFWPEP DNPNHH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459078.10.0PREDICTED: uncharacterized protein LOC103498293 isoform X1
TrEMBLA0A1S3C9D00.0A0A1S3C9D0_CUCME; uncharacterized protein LOC103498293 isoform X1
STRINGXP_008459078.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-139NAC domain containing protein 75