PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C004148P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 707aa MW: 75653.4 Da PI: 6.4699 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.7 | 3.2e-16 | 476 | 522 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq MELO3C004148P1 476 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 522 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.43E-17 | 468 | 526 | No hit | No description |
SuperFamily | SSF47459 | 1.31E-20 | 469 | 534 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-20 | 469 | 530 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.349 | 472 | 521 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-13 | 476 | 522 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-17 | 478 | 527 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MPLSELYRVA RGKLDSTQDK NNMVASDLSM NPENDVFELV WENGQILLQG QSNRTRKNSN 60 LNTSQAQCLP THSPRDRDRD VGYFNNAKMG KFGAIDSVVR DVMSTAPSPD VELAHDDDDD 120 MVPWLSYPLD GHLQHDYSSD FLPELSGVTV NDFPSRNSIA SSIGKASGGN QVNRERDMHL 180 NSMHGANLED GNISKLSSLD VSAARARSST NQLHSSASQQ SQTSFPHLRT KCAGGTENTT 240 GKILHDSLVG HSPQVPLIAS SSSSTARQKL DPTPPNNASN IINFSHFLRP AALLKSNPQN 300 HGVPGTGGSR NLDSMVKNSS AANSQPRESS LIAIQGGIRN ESNSGCKNAV VPSIDGKNPS 360 DAKPPEQSQA NKQPEAACLG DSADHDDRLK HCLEVGATKG YADSEKAVES VIAASLCSRN 420 SVEGASDDPP LNRKRKCHDT EDSEWHSDDV EEDCNDVKRV TSGRGTGSKR SRAAEVHNLS 480 ERRRRDRINE KMRALQELIP NCNKVDKASM LDEAIEYLKT LQLQVQIMSM GAGLFMPPMM 540 FPGAMPPMNT PHIYPPMGVG MGFGIGMPDM NGGIPMVPVP HMQGMHFPGP SMPAQTVMHG 600 LPSSNFQVLG LPGQGLPMPM PRGPVAPFSG GPFVTNSSMA VAPVDNFGST AACSSKDTSP 660 NINSPMVPNG GTDPSMTPAL RQANEQASCV NASSVKPTSK NDLIAN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 480 | 485 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 0.0 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453043.1 | 0.0 | PREDICTED: transcription factor PIF3 isoform X1 | ||||
TrEMBL | A0A1S3BWE9 | 0.0 | A0A1S3BWE9_CUCME; transcription factor PIF3 isoform X1 | ||||
STRING | XP_008453043.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 9e-60 | phytochrome interacting factor 3 |