PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C003212P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB

Protein Properties

Length: 378aa MW: 40555.4 Da PI: 5.469

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C003212P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.9e-17	57	102	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + MELO3C003212P1 57 KGPWSPEEDAILSRLVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 102 79****************************.*********985 PP
2	Myb_DNA-binding	57	4.5e-18	109	153	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ MELO3C003212P1 109 RKPFTDEEDRIIVAAHAVHGNK-WAAIARLLP-GRTDNAIKNHWNST 153 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.922	52	103	IPR017930	Myb domain
SuperFamily	SSF46689	1.83E-30	54	150	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-15	56	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-26	58	110	IPR009057	Homeodomain-like
CDD	cd00167	1.57E-14	59	101	No hit	No description
Pfam	PF13921	2.7E-16	60	117	No hit	No description
PROSITE profile	PS51294	27.519	104	158	IPR017930	Myb domain
SMART	SM00717	6.0E-17	108	156	IPR001005	SANT/Myb domain
CDD	cd00167	7.05E-13	111	154	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.3E-24	111	157	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MEGTAAPEIG AAAPEVGGVD ACDAVASVAD CGSGDDALPM VGEGEATGGR GGKDRVKGPW 60 SPEEDAILSR LVSKFGARNW SLIARGIAGR SGKSCRLRWC NQLDPSVKRK PFTDEEDRII 120 VAAHAVHGNK WAAIARLLPG RTDNAIKNHW NSTLRRRCTE LERIKLESGN VVDDASLEKT 180 KGSSEETLSC GDVNSFKSMD GKDTCSREHL DDQYEDKVPI FVEGQFSHEV NEQPTLFRPV 240 ARVSAFSVYN PLDGQGSLRP FLRPVPMQGP LIQVSKPDVE ASKFLEGVYG DRSVPHQCGH 300 GCCKSHNQGS PIESLLGPEF VDFSEPPPSF PSFELAAIAT DISNLAWLKS GLENGSVRAM 360 GDSAGRLNGS QMQMGHL*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MEGTAAPEIG AAAPEVGGVD ACDAVASVAD CGSGDDALPM VGEGEATGGR GGKDRVKGPW  60
SPEEDAILSR LVSKFGARNW SLIARGIAGR SGKSCRLRWC NQLDPSVKRK PFTDEEDRII  120
VAAHAVHGNK WAAIARLLPG RTDNAIKNHW NSTLRRRCTE LERIKLESGN VVDDASLEKT  180
KGSSEETLSC GDVNSFKSMD GKDTCSREHL DDQYEDKVPI FVEGQFSHEV NEQPTLFRPV  240
ARVSAFSVYN PLDGQGSLRP FLRPVPMQGP LIQVSKPDVE ASKFLEGVYG DRSVPHQCGH  300
GCCKSHNQGS PIESLLGPEF VDFSEPPPSF PSFELAAIAT DISNLAWLKS GLENGSVRAM  360
GDSAGRLNGS QMQMGHL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-42	51	157	1	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681888	0.0	LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008448879.1	0.0	PREDICTED: transcription factor MYB86
Swissprot	Q42575	1e-105	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A1S3BKQ6	0.0	A0A1S3BKQ6_CUCME; transcription factor MYB86
STRING	XP_008448879.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3986	33	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-93	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]