PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C002628P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 313aa MW: 34926.1 Da PI: 8.0209

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C002628P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.8	5.4e-33	54	194	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 lp+G++F+Ptd+e++ e+L++k+ ++ ++++ ++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + MELO3C002628P1 54 LPAGVKFDPTDQEIL-EHLEAKAISDVgklhplIDEFIPtLEGEnGICYTHPQKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdeegnET 146 799*********9.899999776665665443332222333336******.555666777**************74434555578 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v+ +g ++g kk+Lv+y gr++k+ekt+Wvmh+y+l MELO3C002628P1 147 RWHKTGKTRPVFI-GGVVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 194 8********.**********6658*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-38	49	213	IPR003441	NAC domain
PROSITE profile	PS51005	33.892	54	213	IPR003441	NAC domain
Pfam	PF02365	8.4E-15	55	194	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MTWCSGSDDD ESSQQLTNSS SILHHHSSSA VRCPSCGHQI QLQDQGGIHD LPGLPAGVKF 60 DPTDQEILEH LEAKAISDVG KLHPLIDEFI PTLEGENGIC YTHPQKLPGV SKDGQIRHFF 120 HRPSKAYTTG TRKRRKVHTD EEGNETRWHK TGKTRPVFIG GVVKGFKKIL VLYTNYGRQK 180 KPEKTNWVMH QYHLGNNEEE KDGELVVSKV FYQTQPRQCS SAAAATNNNN HLLQSEIKFK 240 NSANHHHVGG GVVDYYNPAV SNNNTNLIIS FDHNTEPEVP QLLPNLVLSG DGSSFIRFPP 300 ADTTKRKLER KL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008442882.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Refseq	XP_016900306.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-119	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1S4DWD6	0.0	A0A1S4DWD6_CUCME; NAC domain-containing protein 73-like
STRING	XP_008442882.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-117	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]