PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000943251
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 325aa    MW: 36433.7 Da    PI: 9.8638
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000943251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.31.7e-1299183186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W +  + aLi+a  ++  +l+ g l+++ W+ev++++   + +g+  +++ +qC+++++ l+k+yk +k   +       s++p++++l+
  MDP0000943251  99 CWNEADTEALITAWGDRYVHLNHGILRQKEWKEVADAVnstQNGGVkpSKTDVQCRNRIDTLKKKYKLEKSKPGP------SKWPFYRRLH 183
                    7*************************************99977777557899***************99988886......58*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.8E-2497185No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MMRFLYGTYS SLSSQVLFVK IKAVGSPSND NWVADVTAGR LNGQIPYPSY SVIFLRLSII  60
TRIDSSHFQS LSPPPPDPNP SLFMDRRTRT HAPAGREDCW NEADTEALIT AWGDRYVHLN  120
HGILRQKEWK EVADAVNSTQ NGGVKPSKTD VQCRNRIDTL KKKYKLEKSK PGPSKWPFYR  180
RLHSLICSTP SNATVSTDSK PPILALTGKS PDPSPYPLKG SRRDDGGDEA AGLSGGAACR  240
ELARAISRFG EMYERIEISK RKQMMELEKQ RMEFDKELEL QRLNMFMDVQ VELGKKMKLP  300
KYSHASGAAI AESLMSSFLV IFDR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.137041e-143bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017187135.11e-180trihelix transcription factor ASIL1 isoform X1
RefseqXP_017187136.11e-180trihelix transcription factor ASIL1 isoform X1
TrEMBLA0A498JHW11e-179A0A498JHW1_MALDO; Uncharacterized protein
STRINGXP_008369279.11e-167(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.15e-55sequence-specific DNA binding transcription factors