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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
MDP0000933138 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 341aa MW: 38165.1 Da PI: 9.9482 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000933138 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 395.3 | 8.4e-121 | 1 | 340 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89
mdd g+re r+k+ +y+ a + l +n+ +q+m+++ erda+i+ernla+sekkaa+aerdmaflqrd+a+aern a++erdn++++l++++n
MDP0000933138 1 MDDGGHREngRHKAdQYKAAqgQWLMHNQpsMKQIMAIMGERDAAIQERNLAFSEKKAALAERDMAFLQRDAAIAERNSAIMERDNAIATLQYRDN 96
9*****999*****99*9554444444432146*************************************************************** PP
GAGA_bind 90 sla....salpvgvqvlsgtksidslqqlse.....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskk 176
sl+ s++p+g+q+++g+k+++++qq+++ p++++++++ r+++++++ + a++ ++ ++++k+p+e+k+ +++kk++ks +
MDP0000933138 97 SLNsgnvSSCPPGCQISRGVKHVHHTQQQQQhvhhmPHMNEPSYGSRDMHTSDSITMPPDASVPTK------SRQPKRPREPKTVQPNKKPSKSPR 186
*9999999*****************9994444888999**********998887775544443333......345667777778888888888888 PP
GAGA_bind 177 kvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243
kvk+es+d + sk+++k +dl+ln+v++Dest+P+P+CsCtG lrqCYkWGnGGWqS+CCttt+S+yP
MDP0000933138 187 KVKRESEDLNkmtfdklhdwkggqdmgsggddlnkqvvvSKSDWKRQDLGLNQVAYDESTMPAPMCSCTGLLRQCYKWGNGGWQSSCCTTTMSMYP 282
8888887744478888999***************************************************************************** PP
GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
LP+++++r+aR++grKmS++af+klL++LaaeG+dlsnpvDLkdhWAkHGtn+++ti+
MDP0000933138 283 LPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 340
*********************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MDDGGHRENG RHKADQYKAA QGQWLMHNQP SMKQIMAIMG ERDAAIQERN LAFSEKKAAL 60
AERDMAFLQR DAAIAERNSA IMERDNAIAT LQYRDNSLNS GNVSSCPPGC QISRGVKHVH 120
HTQQQQQHVH HMPHMNEPSY GSRDMHTSDS ITMPPDASVP TKSRQPKRPR EPKTVQPNKK 180
PSKSPRKVKR ESEDLNKMTF DKLHDWKGGQ DMGSGGDDLN KQVVVSKSDW KRQDLGLNQV 240
AYDESTMPAP MCSCTGLLRQ CYKWGNGGWQ SSCCTTTMSM YPLPAVPNKR HARVGGRKMS 300
GSAFNKLLSR LAAEGHDLSN PVDLKDHWAK HGTNRYITIK *
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
