PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000911051
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 305aa    MW: 33180.9 Da    PI: 5.6884
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000911051genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.7e-093272348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                     +W++Ia +++ +Rt++++k++w+++l
    MDP0000911051  3 RWSAIATHLP-KRTDNEIKNYWNTHL 27
                     4*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.682131IPR017930Myb domain
CDDcd001673.01E-7127No hitNo description
PfamPF002496.0E-7327IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-13338IPR009057Homeodomain-like
SuperFamilySSF466891.25E-7335IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MIRWSAIATH LPKRTDNEIK NYWNTHLKKR LAKMGIDPVT HKPKKDNLLS SVDGQSKNAS  60
NLSHMAQWES ARLEAEARLV RESRLRSQSS SLLHQLTTTN PNTYVPVNSS SSGSTSAQLQ  120
LKWPSSKHSH NSVDLESPTS TLTYNSDQIN VNXASSSAMG AAIMQPAMIE FVGSSGSSET  180
KEEGGDNEQD WKSHLSFTPL GLVHDHHQNI SMSMEAAGAW TTNDHQVGNV AGDMEAADQE  240
GFTNLLLNNS DEVQSLSDGD RGVDSDNGGG SGSGRGSDYY EDNKHYWNSI LNLVNSSPSE  300
SPMF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.119390.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963652.10.0transcription factor MYB16-like
TrEMBLA0A498J4G10.0A0A498J4G1_MALDO; Uncharacterized protein
STRINGXP_008365407.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.15e-45myb domain protein 106