PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000869725 | ||||||||
Common Name | C2H2L15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 281aa MW: 30643.7 Da PI: 7.9932 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 109 | 131 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H MDP0000869725 109 FPCNYCQRKFYSSQALGGHQNAH 131 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.39E-6 | 106 | 136 | No hit | No description |
PROSITE profile | PS50157 | 11.281 | 109 | 136 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 281 aa Download sequence Send to blast |
MEPARNSETN IFSVAEVPPC PNTPLQDPKE TKQKLRVEED EEAMKDQEKQ KKPXIRIDLE 60 ASDSDSNRGF SFDNPELNLL ESLETGSSEG TTTTTTTALV SDAAEPRVFP CNYCQRKFYS 120 SQALGGHQNA HKRERTLAKR GQRMLGSHIT ASAAGXGYPY YSSLASLPLH GGAFRALDIQ 180 AHSMIHKPSS MMPSSAIRFG SSYGHRSFRS RPIFDQQPTV GKLGVAAARG GGGAGRFDVA 240 KSNMVSQGNE EIGKCWLGND SRFKSSSDQE EMKLDLSLKL * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315907.1 | 0.0 | zinc finger protein 3-like | ||||
TrEMBL | D9ZIS4 | 0.0 | D9ZIS4_MALDO; C2H2L domain class transcription factor | ||||
STRING | XP_008378820.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25160.1 | 5e-36 | zinc finger protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000869725 |