PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000833641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 22575.9 Da PI: 4.8448 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 7.7e-17 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+Wv+eIr+p+ + r++lg+f t+e+Aa a++ a+ +l+g MDP0000833641 35 TYRGIRRRS-SGKWVSEIREPK----KpNRIWLGTFTTPEMAAVAYDVAAIALKG 84 69****888.8*********94....468**********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-29 | 35 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.089 | 35 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-34 | 35 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.2E-9 | 35 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 35 | 94 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.2E-11 | 36 | 47 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.47E-29 | 36 | 94 | No hit | No description |
PRINTS | PR00367 | 9.2E-11 | 74 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MYTTNTTTTS ISTGSTTTTS SSTGSTTTST GRHPTYRGIR RRSSGKWVSE IREPKKPNRI 60 WLGTFTTPEM AAVAYDVAAI ALKGQDAELN FPNSASSLPV PASTSPRDIQ AAASSAAAAM 120 GVAIDHASYS RSEVQGDQQD AHQAHKTVDE ADRLMLNQEF VDEDLIFNMP NVLVNMAEGM 180 LLSPPRLDIA GDDAIGADQE QGDHNLWKFN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-16 | 33 | 93 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008359485.2 | 1e-154 | ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q9SJR0 | 8e-57 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A498IHS1 | 1e-153 | A0A498IHS1_MALDO; Uncharacterized protein | ||||
STRING | XP_008359485.1 | 1e-154 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 2e-43 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000833641 |