PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000807856 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 478aa MW: 53080.1 Da PI: 6.6862 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.1 | 8.4e-07 | 271 | 292 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H MDP0000807856 271 FCAICGKGFKRDANLRMHMRGH 292 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.95E-5 | 268 | 296 | No hit | No description |
PROSITE profile | PS50157 | 11.884 | 270 | 297 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 270 | 292 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.001 | 271 | 292 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.4E-6 | 271 | 321 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 272 | 292 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 53 | 319 | 352 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 21 | 357 | 379 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MDPKERQWDT WENPSTGNDV TNTISSDHQP FTSYKSRQHQ QKWESPSVLD YEMGMELSFQ 60 KFHQPSDSQT SHTCNSNNDT KIPDREDGRM HEAQQPDKIQ DWDPRMTLND LSFLEQKIHQ 120 LQDLVHVIVG RRGQVLGRPD ELVAQQQQLI TADLTSIIAQ LISTAGSLLP SVKHTLSTTI 180 PSTGQFGQLG GSFIPSAAGN DVVVKLQVNS GSKLADQANH TDLISNYGTE HMEEHETKDE 240 EDADEGENLP PGSYEILQLE KEEILAPHTH FCAICGKGFK RDANLRMHMR GHGDEYKTAA 300 ALAKPNKESS SEPTLIKRYS CPYAGCKRNK DHKKFQPLKT ILCVKNHYKR THCDKSYTCS 360 RCNSKKFSVI ADLKTHEKHC GKDKWLCSCG TTFSRKDKLF GHIALFQGHT PAIPPDEPKG 420 TLGPTNHGEG SEASNRVGSI NFSFGSTAPG GGGGSQNLMD VKESIDDPTS YFSPLNF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.8050 | 0.0 | bud| cell culture| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots (e.g. root tips and lateral roots), leaves, flowers (e.g. stigma, sepal, anther, and filament), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008365851.3 | 0.0 | LOW QUALITY PROTEIN: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q9C8N5 | 1e-180 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A498J3B1 | 0.0 | A0A498J3B1_MALDO; Uncharacterized protein | ||||
STRING | XP_008365851.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5340 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-173 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000807856 |