PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000769354
Common NameC2H2L6
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 323aa    MW: 35231 Da    PI: 7.7048
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000769354genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00075124146123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C+++F++   L  H  +H
  MDP0000769354 124 YECKTCNRTFPSFQALGGHRASH 146
                    99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.9E-13123148IPR007087Zinc finger, C2H2
SuperFamilySSF576677.4E-8123146No hitNo description
SMARTSM003550.052124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658124151IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576677.4E-8206233No hitNo description
PfamPF139124.3E-10211234IPR007087Zinc finger, C2H2
SMARTSM003550.099211233IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871211238IPR007087Zinc finger, C2H2
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEGQEELVVT NDQASQMIMI KGKRTKRQRP QSPNGLVTAA VTSSSSSACG AGTIGGGDHD  60
YNYYGNSFTS PTTSGEIYES TEEEEDMANC LILLAQGXHV NPKQTIEERL AQNTNMGKAG  120
FFVYECKTCN RTFPSFQALG GHRASHKKPK SMSSTEEMIK KSPPAAAPPT HHFITATTFE  180
EFEDQSKQLI KYKSSPPPAI PIQVGNKPKI HECSICRSEF TSGQALGGHM RRHRTASAAT  240
NSNTISGSAT ATHVAVNNSS NNMIGSSTKL QRNVLPLDLN LPAPEDHDHH HHHHHRESKF  300
QFVPTQQTTL VFNAPALVDC HY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.135870.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315900.10.0zinc finger protein ZAT5-like
TrEMBLD9ZIU20.0D9ZIU2_MALDO; C2H2L domain class transcription factor
STRINGXP_008377900.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-56C2H2 family protein