PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000759009

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 237aa MW: 27208.1 Da PI: 6.9334

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000759009	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.4	2.4e-28	69	157	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y++YA++vGF++r+ + ++s+r+g+i +r+f C+keg+r+++++k+ + rr+r+etr gCka+++ +kek+gkw+vtkle++H H++ MDP0000759009 69 EYYDAYATRVGFRIRVGNFHRSNRDGSINSRKFLCNKEGFRDNKQSKRGEVRRPREETREGCKAMIMARKEKSGKWVVTKLETKHCHPM 157 69*************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-26	69	157	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MAADPTPMES EADLNRLVVE SPVERDIPNA ESGEXLDSNN VTDLNENEVD GILEPYVGME 60 FDSEEAXKEY YDAYATRVGF RIRVGNFHRS NRDGSINSRK FLCNKEGFRD NKQSKRGEVR 120 RPREETREGC KAMIMARKEK SGKWVVTKLE TKHCHPMWIS RGKRVTIPAP SQDEKDKKIR 180 ELSAELYRAN QQLAGCRKTL EMVLKEVDQH ADRLTKSVQD IVKNVKQIED KDRENL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008382548.2	1e-174	protein FAR1-RELATED SEQUENCE 6-like isoform X2
TrEMBL	A0A498IZT6	1e-145	A0A498IZT6_MALDO; Uncharacterized protein
STRING	XP_008382548.1	1e-174	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-47	FAR1 family protein

Link Out ? help Back to Top
Phytozome	MDP0000759009