PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000742771
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 482aa    MW: 52926.1 Da    PI: 6.5076
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000742771genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.4e-17107154148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl
    MDP0000742771 107 KGPWTPEEDQKLLAYIEEHGHGSWRALPTKAGLQRCGKSCRLRWTNYL 154
                      79********************************************97 PP
2Myb_DNA-binding52.51.2e-16160205148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
    MDP0000742771 160 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 205
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-2598157IPR009057Homeodomain-like
PROSITE profilePS5129418.015102154IPR017930Myb domain
SuperFamilySSF466892.47E-30104201IPR009057Homeodomain-like
SMARTSM007174.0E-14106156IPR001005SANT/Myb domain
PfamPF002492.4E-16107154IPR001005SANT/Myb domain
CDDcd001671.60E-11109154No hitNo description
PROSITE profilePS5129425.891155209IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-26158209IPR009057Homeodomain-like
SMARTSM007171.2E-16159207IPR001005SANT/Myb domain
PfamPF002496.2E-16160205IPR001005SANT/Myb domain
CDDcd001671.00E-11162205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MGSVILDPNI DEICYLTING EPFMFNLXTK ISSRMDDKII KEEFTRTASH IRSSLYRSPS  60
PFTTFECTSF GRATFGPGSV MASDPLTHTT NILMGRSPCC DKVGLKKGPW TPEEDQKLLA  120
YIEEHGHGSW RALPTKAGLQ RCGKSCRLRW TNYLRPDIKR GKFSLQEEQT IIQLHALLGN  180
RWSAIATHLP KRTDNEIKNY WNTHLKKRLA KMGIDPVTHK PKNDALLXSA DGHSKNVSNL  240
SHMAQWESAR LEAEARLVRE SKLRSHSSSL LHQLTTTNPN TYVLVNSSSS GSTSAQLQIK  300
WPSSNPSNNN IDLESSTSTL NYNSDQTNVN NASSSAVGSA IMKPAMIEFV GCSXSSETKE  360
ECGDKEDWKS HLSFTSLGLV HDHQTITMSM DAGSAWPTAT DHQVGYVAAD MAAADQEGFT  420
NLLLNNSDEV QSLSDGDHGG DSDNGGGSGS GSGSDYYEDN KHYWNSILNL VNSSPSESPL  480
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-261052095108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.119390.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269|PubMed:23709630}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341595.20.0transcription factor MYB16-like
SwissprotQ9LXF11e-128MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A498HE330.0A0A498HE33_MALDO; Uncharacterized protein
STRINGXP_008341595.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-118myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]