PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000737128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 307aa MW: 34512.3 Da PI: 6.2327 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.7e-18 | 87 | 139 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe+ +++ e++ +LAk lgL+ rq+ +WFqNrRa++k MDP0000737128 87 KKRLNLEQVKTLEKSFEMGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 139 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130 | 9.2e-42 | 85 | 176 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+ eqvk+LE+sFe+ +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk+++dalk++n++L++++++L++el MDP0000737128 85 EKKKRLNLEQVKTLEKSFEMGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKNKFDALKADNDALQAHNKKLQAELL 176 69**************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.03E-19 | 69 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.2 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-17 | 84 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.05E-16 | 86 | 142 | No hit | No description |
Pfam | PF00046 | 1.7E-15 | 87 | 139 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 89 | 149 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 112 | 121 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 121 | 137 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.6E-15 | 141 | 181 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MKGVEGEGMQ WELGGEGEVR DGKDPDEWSG DLERICGGMP FMMKRSLSFS GVENNRCHHH 60 DQEAALHGGG GGDDDLSDDG SQMGEKKKRL NLEQVKTLEK SFEMGNKLEP ERKMQLAKAL 120 GLQPRQIAIW FQNRRARWKT KQLEKDYDVL KNKFDALKAD NDALQAHNKK LQAELLTLKS 180 KDSSNEGGFN FKKEIDQGSW SNGSENSFDH HHHHHHLNLE ISRTTATTSS PPSDSPHMNG 240 KNLFPPSSSS LMSASTTQLL QGSSRSDLQS LKLDQMIQDE GLCSMFNGID QEQQGFWPWP 300 EQQHFH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.24314 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008341550.1 | 0.0 | homeobox-leucine zipper protein HAT7 | ||||
Swissprot | Q8LC03 | 1e-71 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A498HJM9 | 0.0 | A0A498HJM9_MALDO; Uncharacterized protein | ||||
STRING | XP_008341550.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 2e-63 | homeobox 3 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000737128 |
Publications ? help Back to Top | |||
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