PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000716457 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 387aa MW: 42737.9 Da PI: 7.0799 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W + +++ g+ R++k+c++rw +yl MDP0000716457 14 KGPWTPEEDQKLLTYIEEHGHGSWQALPAKAGLQRCGKSCRLRWSNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.1 | 2.2e-14 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ +E + +++++++ G++ W++Ia++++ +Rt++++k++w+++l MDP0000716457 67 RGNFNLQEAQTIIQLHALVGNR-WSAIASHLP-KRTDNEIKNYWNTHL 112 8999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-24 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.824 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.49E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.34E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.44 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.66E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MGRSPCWEKV GLKKGPWTPE EDQKLLTYIE EHGHGSWQAL PAKAGLQRCG KSCRLRWSNY 60 LRPDIKRGNF NLQEAQTIIQ LHALVGNRWS AIASHLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPMTHKLKH HEGYAKDSAN ISHMAQWESA RLEAEARLGK ESKLVITNAN PFQHHLMICS 180 SPNPAHQVVH VSNAPPALPC LDVLKAWREG CSLTTNSTIR NNVNSIMFSG GSMTAVDDLE 240 SPTSTLHLRH VNNAFNPPPM LNINNVFPCE SGVLQNNDNV TYGCTDASAA WFADGFRSGN 300 VDEEENVVVP AELSSKVMEG FTDVLVYDSE DHQQNALLGG EISGNGGDDG SCGGRGFEEN 360 RNYWNSILNL VNASASGSPV FGRFRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008350919.1 | 0.0 | transcription factor MYB16-like | ||||
TrEMBL | A0A498IC08 | 0.0 | A0A498IC08_MALDO; Uncharacterized protein | ||||
STRING | XP_008350919.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF835 | 34 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 1e-101 | myb domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000716457 |