PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000713024 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 202aa MW: 22735.3 Da PI: 6.7874 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.2 | 6.5e-16 | 24 | 70 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie v+fskRr g++ KA LS LC+aevavi+fs+ g+ y + MDP0000713024 24 IEKPNSLLVSFSKRRGGLFRKACQLSGLCGAEVAVIVFSPCGRXYVF 70 555566679*********************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.96 | 14 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-19 | 14 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-14 | 16 | 36 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-21 | 17 | 86 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.5E-19 | 23 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-14 | 36 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-14 | 51 | 72 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MPGIINTALP NQKPVQRKLV IKKIEKPNSL LVSFSKRRGG LFRKACQLSG LCGAEVAVIV 60 FSPCGRXYVF GHPSVDSVLS RLERVXTALH GHQYISMHAS SEAEDHXTDS SSIIESNSKE 120 SCMVSKTSID LENLGLDLEK DTEEXEEDEA SKFWWDQPIE NVKKLDELKQ FKSSLEKLKA 180 KVITQLDEXE MRXXVVRHYL M* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008350236.2 | 1e-132 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A498IGR7 | 5e-82 | A0A498IGR7_MALDO; Uncharacterized protein | ||||
STRING | XP_008350236.1 | 1e-140 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-23 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000713024 |