PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000711774
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 307aa    MW: 34049.5 Da    PI: 6.7163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000711774genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08177217954
                    HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  MDP0000711774 177 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 217
                    699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.96E-10174222No hitNo description
Gene3DG3DSA:4.10.280.103.0E-12174228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-14174228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-6178217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDINIDYASK LSLNSSGGQD LNHDDVSRED PILRHEISSS FEYSSLWPNF PLHLEGHHQT  60
PSSSSTHHQY VPSPSNIHDH DQLIIDHHHQ HHHRHHTHQV LLAAAAGNNN NTFMELDDHE  120
DAQDQGPAAT GEEELGAMKE MMYRIAAMQP VDIDPATIRK PKRRNVRISD DPQSVAARHR  180
RERISEKIRI LQRLVPGGTK MDTASMLDEA IRYVKFLKRQ IRLLQSSSSS SSNVNNISID  240
GHHHQHDQHH PAAAPAAGAH DQCNTNIING PSTSVGVPTA GVGLPLEWPL QHGSTASSSF  300
TRHPDN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371659.10.0transcription factor HEC3-like
TrEMBLA0A498KMZ80.0A0A498KMZ8_MALDO; Uncharacterized protein
STRINGXP_008371659.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-47bHLH family protein