PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000704958
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 186aa    MW: 20976.8 Da    PI: 8.0818
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000704958genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000286253554
                   TS-STCHHHHHHHHHHHHHH CS
            HLH 35 skKlsKaeiLekAveYIksL 54
                   ++K++ a+iL  A++YI++L
  MDP0000704958  6 CRKNDRASILGDAIDYINEL 25
                   589**************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.92E-5642IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-4733IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MHQLFCRKND RASILGDAID YINELLRSVD ELKLLVEKKR RGRERGKRRK TEQDGGSAGD  60
DENCNVKPLG EHHDQSYSNG SLRSSWLQRK SKDTEVDVRI IDDEVTIKLV QRKKINLLLF  120
VSRILDELQL DLHHVAGGHI GNSYSFLFNT KMYEGSCLYA SAIAGKLIEV LDIQYAAAVP  180
PTSSY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302991e-169bud| fruit
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008347044.21e-124transcription factor bHLH91-like
SwissprotQ84TK11e-64BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A498JHD31e-123A0A498JHD3_MALDO; Uncharacterized protein
STRINGXP_009361467.11e-106(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.16e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]