PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000687814

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 381aa MW: 41688.1 Da PI: 7.014

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000687814	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.1e-05	335	373	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq MDP0000687814 335 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 373 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.522	323	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.00E-5	333	377	No hit	No description
SuperFamily	SSF47459	1.07E-9	333	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-8	337	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MESANLHRQQ HHQLQENIVG SSSLAATTPS CYAVGTKHAW TPTTTLSSSG NSLSNSSLDX 60 LNSSMVPDLG FHWRTNITSD HQSAHDLANI KEELSSSSSL DHHSSFPKLT EMLTAAVSSS 120 SIDHDQYFQF MKNEQTDQMV MNDLSEKLLL KTLSSGCQMN STFNAPHHHQ ISPSARDHHQ 180 FYSNDHHHLL HNSNLMGGVP PAMPSRSAGH FSQIYPSINV SNLNRSLSTL STSSLDMNLQ 240 AMDLLGASAR FSTGDGSSFS TQPNDSHDAC GLYKERQKSF GTLEQMHQGK VSSFDNEITE 300 VKRPGSLIEP KATQAAAPKK SRLESRTSCP PFKVRKEKLG DRIAALQQLV APFGKTDTAS 360 VLMEAIGYIK FLQNQVEVCT *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MESANLHRQQ HHQLQENIVG SSSLAATTPS CYAVGTKHAW TPTTTLSSSG NSLSNSSLDX  60
LNSSMVPDLG FHWRTNITSD HQSAHDLANI KEELSSSSSL DHHSSFPKLT EMLTAAVSSS  120
SIDHDQYFQF MKNEQTDQMV MNDLSEKLLL KTLSSGCQMN STFNAPHHHQ ISPSARDHHQ  180
FYSNDHHHLL HNSNLMGGVP PAMPSRSAGH FSQIYPSINV SNLNRSLSTL STSSLDMNLQ  240
AMDLLGASAR FSTGDGSSFS TQPNDSHDAC GLYKERQKSF GTLEQMHQGK VSSFDNEITE  300
VKRPGSLIEP KATQAAAPKK SRLESRTSCP PFKVRKEKLG DRIAALQQLV APFGKTDTAS  360
VLMEAIGYIK FLQNQVEVCT *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008377204.2	0.0	transcription factor bHLH110 isoform X1
TrEMBL	A0A498KP83	0.0	A0A498KP83_MALDO; Uncharacterized protein
STRING	XP_008364945.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	7e-36	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000687814