PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000649174
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 342aa    MW: 38709.9 Da    PI: 5.9867
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000649174genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.27.8e-2239132185
       trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                    rWt++e+ +Lie++r +e++++rg+           +p+W+ vs+++r+rg++r p+qC+++w+nl  ++kki+++e + + e++s +++ +++
  MDP0000649174  39 RWTRHETFVLIEGKRVVENAVQRGRrstsalgaeNFEPKWDLVSSYCRQRGMSRLPVQCRKRWSNLLVDFKKIRNWEAQIEREAESFWVMXNDV 132
                    8*********************98555666666588*******************************************999998888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-436106IPR009057Homeodomain-like
PfamPF138372.5E-1138128No hitNo description
PROSITE profilePS500906.73739105IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MALESMNHEA ASPRPDQAGK QQTPNGSSED KTKITRHPRW TRHETFVLIE GKRVVENAVQ  60
RGRRSTSALG AENFEPKWDL VSSYCRQRGM SRLPVQCRKR WSNLLVDFKK IRNWEAQIER  120
EAESFWVMXN DVRRERRLPG FFDREVYNVL DGKEVTATEA CPLALFMPGQ TDAMDGDGTE  180
EAAAEEEEEE GPEKDLHGGR DDMAEDGLCS DFEESGQDKT AKKSKNKNIM QDSPTKTVTT  240
PMPNSGAVKE KRSLGSKTSG ENIYQEKWKQ RRVSTDESEH SNNIDQLVKV LERSSNMLSA  300
QLEAHNINCH LEREQRKEQN NSILAALGKV TDVLARIADK L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374273.20.0trihelix transcription factor ASR3-like
TrEMBLA0A498JJ470.0A0A498JJ47_MALDO; Uncharacterized protein
STRINGXP_008374273.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-75Trihelix family protein