PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000624476
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YC
Protein Properties Length: 269aa    MW: 29661.8 Da    PI: 5.2812
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000624476genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.32.6e-54801841102
          NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 
                    ql+ fw++q   +eka+dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflv
  MDP0000624476  80 QLQEFWSDQmqdVEKASDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEIFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLV 175
                    89*****997777999******************************************************************************** PP

          NF-YC  94 divprdelk 102
                    di+prdelk
  MDP0000624476 176 DIIPRDELK 184
                    ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.21E-3274174IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.0E-3794166IPR009072Histone-fold
PfamPF008083.4E-21102165IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDHSEQTLQQ QQQPVDGAVA SSGQMASYAP SSCQTAPIVA SGTLAVAVTS PSQAPTTFPD  60
PSHQLAYQKI QHFPHXQQVQ LQEFWSDQMQ DVEKASDFKN HSLPLARIKK IMKADEDVRM  120
ISAEAPVVFA KACEIFILEL TLRSWIHTEE NKRRTLQKND IAAAISRTDV FDFLVDIIPR  180
DELKEEGLGV TKATLPVVGS PADVPYYYVP PQHPVGAPGM IMGKPVDQPA LYAAQQPRPP  240
VAFMPWAXSQ PQQPQQQQQX AQQQQADT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5688180395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.120150.0bud| cell culture| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008356118.20.0nuclear transcription factor Y subunit C-2-like
TrEMBLA0A498IT731e-139A0A498IT73_MALDO; Uncharacterized protein
STRINGXP_008346078.10.0(Malus domestica)
STRINGXP_008356118.10.0(Malus domestica)
STRINGXP_008372003.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-76nuclear factor Y, subunit C2