PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000533379
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 397aa    MW: 44782.6 Da    PI: 8.3704
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000533379genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.43.6e-16242324290
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    fY++YA++vGF +r+ +s+ks+r+g+i++r + C    +++++        +++  +   C a++ +k+e  g+w+++k+  +HnH l+
  MDP0000533379 242 FYDDYARRVGFVTRVLSSRKSERDGSIISRGLGCRGVSENRRKVM------QKECGEGEVCPAMVLLKQEMPGRWVIKKFLGDHNHLLV 324
                    9*********************************86665555544......478888999**************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525402.09E-232113IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.3E-18358IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:1.10.8.604.1E-1760109No hitNo description
PfamPF031011.3E-13242324IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MPVLVLNEVD KLSREAQHSL RRTMEKYSAY CRLILCCNSS SKVTEAIRSR CLNVRINAPT  60
EDQIVKVLEF IGKKEVLQLP SGFTARIAEK SNRSLRRAIL SLETCRVQQL SARVLIVHQL  120
CEAVIFFLCA YAPCRNSTGS DGYGLLYFSC GCRYPFTSNQ SIPPMDWEEY VSEIASDIMK  180
EQSPKSAFYN LIRCATVEVQ MDDLNGTVET SAGGESNNIE VGPCQEPYEG MLFESEEAAK  240
VFYDDYARRV GFVTRVLSSR KSERDGSIIS RGLGCRGVSE NRRKVMQKEC GEGEVCPAMV  300
LLKQEMPGRW VIKKFLGDHN HLLVIQSPKI RRTLDEKDKK IQELSAELRV KKRLSAAYRD  360
QLLAFIKDIE DHNAHLSTKV QSVSNKLKEL EAKTVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sxj_E9e-164125138271Activator 1 40 kDa subunit
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.217590.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347677.11e-137PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008369147.11e-142(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.15e-53FAR1 family protein