PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000489010
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 345aa    MW: 39551.4 Da    PI: 6.1197
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000489010genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.33.2e-2143136185
       trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                    rWt+qe+ +Lie+ r +e+ ++rg+           +p+W+ vs+++r+rg++r p+qC+++w+nl  ++kki+++e + ++e++s +++ +++
  MDP0000489010  43 RWTRQETFVLIEGXRXVENVVQRGRrstsalgteNFEPKWDLVSSYCRQRGVSRWPVQCRKRWSNLLVDFKKIRNWEAQINQEAESFWVMRNDV 136
                    8*********************98555666666588********************************************99999999988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-1042132No hitNo description
PROSITE profilePS500906.95743109IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-443109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MELESMKHEA ASPRPDQPDK QRTPDGTGSL VSEDKTKITR HPRWTRQETF VLIEGXRXVE  60
NVVQRGRRST SALGTENFEP KWDLVSSYCR QRGVSRWPVQ CRKRWSNLLV DFKKIRNWEA  120
QINQEAESFW VMRNDVRRER RLPXFFDREV YNVLVGKEVT AMEACPLALF MPGQTDVKDG  180
DGTEDAAAEE EDEEGPEKDL NGSRDDMAED RLSSDFEESG QDETAKKSKN ENLMQDSPTK  240
TVTTPMPNSG VIKEKRSLGS KTSGENVYQE KWKQRRVSTD ESKHRNIAQL IKVLERNSNM  300
LNAQLEAHNI NCHFEREQRK EQNNSILGAL GKVTDVLARI ADKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392757.20.0trihelix transcription factor ASR3-like
TrEMBLA0A498I3Y60.0A0A498I3Y6_MALDO; Uncharacterized protein
STRINGXP_008392757.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.15e-71Trihelix family protein