PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000478512 | ||||||||
Common Name | MYB35 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 390aa MW: 42851.6 Da PI: 5.5048 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.4e-16 | 43 | 88 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v +G ++W++Iar + gR++k+c++rw + MDP0000478512 43 KGPWSPEEDAVLTRLVSNFGARNWSLIARGID-GRSGKSCRLRWCNQ 88 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56 | 9.4e-18 | 95 | 139 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd +v a++ +G++ W++Iar ++ gRt++ +k++w++ MDP0000478512 95 RKPFTHEEDRMIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 139 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.54 | 38 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.03E-30 | 41 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-13 | 42 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 43 | 88 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 44 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.16E-12 | 45 | 87 | No hit | No description |
PROSITE profile | PS51294 | 26.599 | 90 | 144 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-17 | 94 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-15 | 95 | 139 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-12 | 97 | 140 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-24 | 97 | 143 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
METEVADDPA AVDIEAGYGG VDSGEEAVXG GGSRRKSGRD NVKGPWSPEE DAVLTRLVSN 60 FGARNWSLIA RGIDGRSGKS CRLRWCNQLD PAVKRKPFTH EEDRMIVAAH AIHGNKWAAI 120 ARLLPGRTDN AIKNHWNSTL KRRCMDTDKI KLESGNMVED VSFDKTKGSS EETSYGDVNS 180 SKSMEGREVS SLEHMDDQDE YNGSSEVQFS HEATEQPTLF RPMARISAFS VYNQSNSQEP 240 ASSFPRPIPV QGPLVQASKL DVGINKFLEG VYGERSVPXR CGHGCCRAES GMNFQNSLLG 300 PEFVEFSEPP LFPSFELAAI ATDISNLAWL KSGLENNSVR AVGETAGRIT THGSQDQTGR 360 FEESRXNHLF PTEERKDRLM GMKTNVXST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-40 | 40 | 143 | 4 | 107 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.24677 | 0.0 | bud| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00337 | DAP | Transfer from AT3G09230 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ074459 | 0.0 | DQ074459.1 Malus x domestica MYB2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315939.1 | 0.0 | transcription factor MYB44-like | ||||
Swissprot | Q42575 | 1e-99 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A498IGU2 | 0.0 | A0A498IGU2_MALDO; Uncharacterized protein | ||||
TrEMBL | D9ZJ63 | 0.0 | D9ZJ63_MALDO; MYB domain class transcription factor | ||||
STRING | XP_008388098.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3986 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 1e-101 | myb domain protein 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000478512 |
Publications ? help Back to Top | |||
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