PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000467211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 332aa MW: 35860 Da PI: 7.9897 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00091 | 143 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H MDP0000467211 143 YQCKTCDRCFPSFQALGGHRASH 165 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00046 | 234 | 256 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H MDP0000467211 234 HECSVCGAEFTSGQALGGHMRRH 256 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.49E-8 | 142 | 165 | No hit | No description |
SMART | SM00355 | 0.077 | 143 | 165 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.182 | 143 | 170 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.6E-10 | 143 | 167 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 145 | 165 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.49E-8 | 229 | 256 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.6E-4 | 232 | 256 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.2E-12 | 233 | 257 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 234 | 256 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.743 | 234 | 256 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 236 | 256 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 332 aa Download sequence Send to blast |
MMMMMEAADH QDQDEAALGS KDQAQMMIIK GKRTKRQRLA SPLSXIATTA SSSSSAGHDH 60 DHLQHQGLVG PRPRDSTDVV GPTASPATSA DQFTEISTEE KEDMANCLIL LAQGNSIPKP 120 QNRNLVTNNK AASAAASAGL YLYQCKTCDR CFPSFQALGG HRASHKKPGK QININSTTQE 180 NKKALLFVEE AEEFDRFNNT STMLSLQISN TAFRALSSAT SPCYNNNNKA NKVHECSVCG 240 AEFTSGQALG GHMRRHRTFI NTAATTTAVA AMSSPPQSQS GSKRPRNVLQ LDLNLPAPEE 300 ECLHETSKFP FGPKMEQVIV FSASPLVGCH Y* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009349742.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A498K4J5 | 0.0 | A0A498K4J5_MALDO; Uncharacterized protein | ||||
STRING | XP_009349742.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-51 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000467211 |