PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000426372

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 254aa MW: 26843.4 Da PI: 6.6101

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000426372	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	29	89	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWt+GG+lrnvPvGgg+rkn k+s MDP0000426372 29 QTEPLHCPRCDSDNTKFCYYNNYNLAQPRHFCKSCRRYWTHGGTLRNVPVGGGSRKNTKRS 89 57889****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-24	26	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-33	32	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.245	33	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MPFDSADAQM RQSATTRVQH SLGHPPPQQT EPLHCPRCDS DNTKFCYYNN YNLAQPRHFC 60 KSCRRYWTHG GTLRNVPVGG GSRKNTKRSR PSCSSSSGSP SSSSLTQEVS SVAPTKPISF 120 PVEPKLETAL DHDKLMDLNE SAVGNGGFTS MLSSQGPPAP GFLALGGFGY GFGYGLGLGQ 180 GLDEVGTFGY GGGRGVLAFP EEGDFANINH NNSGAVSGGS VGCNTWQIMT GGDGXMAENN 240 GDCFTWPELE ISK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.28845	0.0	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354149	8e-34	AK354149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1005F20.
GenBank	AK360934	8e-34	AK360934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128K17.
GenBank	AK377058	8e-34	AK377058.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3146P05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008377379.2	0.0	dof zinc finger protein DOF3.4-like
TrEMBL	A0A498JBV7	1e-179	A0A498JBV7_MALDO; Uncharacterized protein
STRING	XP_008377379.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	7e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	MDP0000426372