 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
MDP0000404198 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
| Family |
CPP |
| Protein Properties |
Length: 526aa MW: 56142.2 Da PI: 8.4856 |
| Description |
CPP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MDP0000404198 | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCR | 51.1 | 2.6e-16 | 147 | 186 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e
MDP0000404198 147 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 186
589***********************************65 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 526 aa
Download sequence Send
to blast |
MNDVPAKKLA RQLDFTVFGS APTSVAVPEL SKPPLPTVAV PPSLPKPPVV SVPVPVSVPQ 60
QPHTLKPGKP ESPKSRPRPN VDAKDGTPKK QKQCNCKHSR CLKLARNDAI EATLERNPNA 120
FRPKIASSPH GARDTREEAG EVLILGKHNK GCHCKKSGCL KKYCECFQAN ILCSENCKCM 180
DCKNFEGSEE RQALFHGDHG NNMAYLQQAA NAAITGAIGS SGYASSPPVS KKRKGQELFG 240
PTAKDPSLHR IGQFQQGNNI RAPAPSPLSS VPVNHLGGTT GLGPSKFTYR SLLADIIQPQ 300
DLKELCSVLV VVAEEAAKTL ADQRNTAEKP TETSLASTTQ DRLQSEKESD AQNAVADDRS 360
SLNEADKISP EDSNSDGADV MKGRPMSPGT LALMCDEQDT MFMSAASNGL MGDGNTSSRL 420
PNGQGMTEVY AEQERIVLTK FRDCLNRLIT FARSEAETQK DQHSNGSTNT RIDSQTPQRP 480
ITNGVTKPAV PLAANTTTSQ TVTAAVSALS KAPSHPENGD GRPKA*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AM484028 | 3e-87 | AM484028.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X101832.7, clone ENTAV 115. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT4G29000.1 | 1e-165 | Tesmin/TSO1-like CXC domain-containing protein |
