PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000399495
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 488aa    MW: 53047.5 Da    PI: 8.8342
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000399495genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.98.6e-16105197186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  + +L+ea++e+ ++l+rg+l++ +Weev++ +        + +   ++ +qCk+k++nl+kryk + ++    +    s++ +f++le
  MDP0000399495 105 EWSDTAIGCLLEAYTEKFNQLNRGNLRGRDWEEVAEMLsercgtggANKSAYKTVEQCKNKIDNLKKRYKVELQRIXX-SGLGASHWHWFKKLE 197
                    5***********************************9999998888777788899***************98888776.4788889*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-19103197No hitNo description
Gene3DG3DSA:3.40.1160.102.0E-49245467IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.36E-38251475IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.55E-91254467No hitNo description
PfamPF006961.4E-12255440IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MASSDNFPMI DASSHLQAPT RPGDTIDSAA AANNGNFFPP PFPDDIDRSP NPTRNSNTKR  60
SSYYNKRFKS SSANPNPTTS TTEAESSSGP ETASQRGDYR KDREEWSDTA IGCLLEAYTE  120
KFNQLNRGNL RGRDWEEVAE MLSERCGTGG ANKSAYKTVE QCKNKIDNLK KRYKVELQRI  180
XXSGLGASHW HWFKKLEVIL GSXVAAKGGG GSDEERSVGR AGGNAAKQLK RYTPGSAAFG  240
NNLKAKSMPN LKWRRVMLKI SGAALAGDCQ SIDPKVAMQI AEEVARACHL GVEVAIVVGG  300
RNVFCGETWV SSTGLDRSTA YHIGMMATVM NSVILQSALE KVGLQARVQT SLTIPEVSEP  360
YNRLRAIRHL EKGRVVIFGG TGAGTGNYLF TTDTAAALRA SESRSLPWPR FNAEAVVKGT  420
NFNGIYDSHP GNXSANVDII CYREVVPNSN TSMDAMALTY CEENRIPGWS HSFLIAHILA  480
NVEPTFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-512474793230Uridylate kinase
3ek5_B3e-512474793230Uridylate kinase
3ek5_C3e-512474793230Uridylate kinase
3ek5_D3e-512474793230Uridylate kinase
3ek5_E3e-512474793230Uridylate kinase
3ek5_F3e-512474793230Uridylate kinase
3ek6_A3e-512474793230Uridylate kinase
3ek6_B3e-512474793230Uridylate kinase
3ek6_C3e-512474793230Uridylate kinase
3ek6_D3e-512474793230Uridylate kinase
3ek6_E3e-512474793230Uridylate kinase
3ek6_F3e-512474793230Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008345426.20.0uncharacterized protein LOC103408349 isoform X1
TrEMBLA0A498KGM90.0A0A498KGM9_MALDO; Uncharacterized protein
STRINGXP_008345426.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.21e-143Trihelix family protein