PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000319726
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 859aa    MW: 97738.7 Da    PI: 7.3697
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000319726genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.1e-14184230354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  MDP0000319726 184 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 230
                    79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-11184230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-14185237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-14185239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-4194233No hitNo description
PfamPF102697.1E-67421705IPR019396Transmembrane Fragile-X-F-associated protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MEIAKSMEER GDLTELEAEK YTREGKMMCG KEEDQGECSQ SIQNLQAFQE HLFLQQQQHH  60
QMQQHQQGGL IFPHDHQPPP PTPILQPWTX PPIYNPTAHD PFLLPTPPQI PSSSSYASFF  120
NRRPPSLQFT YDGSASDHHH HLRILSETLG PMVQPGSGAF GLQAELGKLT AQEIMDAKAL  180
AASKSHSEAE RRRRERINNH LAKLRSLLPS TTKTDKASLL AEVIQHVKEL KRQTSLIAET  240
SPVPTETDEL LVDDASDEDG KFVIKASLCC EDRSDLLPDL IKTLKALRLR TLKAEITTLG  300
GRVKNVLFIT GEEDPSSSEG EQVQMQHQQY CKSSIQEALK AVMEKTGCGD QDQSSTGSAK  360
RQRTNNINIL EHRQKTSISS QQYFQEMLVQ RRVMTWRSVA KSLQTLVAHA SLFTFTTLLV  420
LKLHRSVRYP WWIIFSPLWL FHVVVARGRF SXPAPKLPND RNWAPFHAVM ATPLLVAFEL  480
MLCXYLQSRY VCAVVSLKIV FAPLLAFELA ILFDNVRMCK ALMPGDDEHV NDDVIWETLP  540
HFWISISMVF FLAATVFTLL KINXTSVYPS TELHRVYAFL VCTKWYNPAI HRHAHIQEPC  600
SSSMNVRYLD WNSGLVISSD EDQDETVVCS LQDIGGHIMK VPLIIFQILL FMHLEVYSAF  660
KRTYLLVVWN VLNMSSSQVY LSFQGRPSAA RHIPIPVLFA PLLLLQGVGL LFSAYRLTEK  720
IVLLVHNGVF SVRYVDIASK VREYFGFYRR GSRLLGWWSI DEGSREEQAR LYCAGASGYN  780
TFSPDIVKKL PRSDLVEEVW KLQAALSEQT EVTKFSQQEY ERLQNVPSSC THSPIHTLAX  840
HSLPAYXIYV DLIHRIRYS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.258340.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356159.10.0PREDICTED: uncharacterized protein LOC103947042 isoform X1
TrEMBLA0A498I6I40.0A0A498I6I4_MALDO; Uncharacterized protein
STRINGXP_009356159.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-88bHLH family protein