PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000318457
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 352aa    MW: 39885.2 Da    PI: 8.5326
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000318457genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.3e-1247103155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  MDP0000318457  47 SIYRGVTRHRWTGRYEAHLWDkNCWNEtQNKKGRQGAYDDEEAAAHAYDLAALKYWG 103
                    57*******************99999998988888********************98 PP
2AP251.33e-16146197155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  MDP0000318457 146 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 197
                    89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-847103IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1547113IPR016177DNA-binding domain
PROSITE profilePS5103218.84848111IPR001471AP2/ERF domain
SMARTSM003805.6E-2148117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-1348112IPR001471AP2/ERF domain
PRINTSPR003674.0E-64960IPR001471AP2/ERF domain
CDDcd000189.33E-24146207No hitNo description
SuperFamilySSF541719.81E-18146207IPR016177DNA-binding domain
PfamPF008475.5E-12146197IPR001471AP2/ERF domain
SMARTSM003801.2E-24147211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17147206IPR001471AP2/ERF domain
PROSITE profilePS5103218.334147205IPR001471AP2/ERF domain
PRINTSPR003674.0E-6187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAKLSHQNQK LNANNNTNAT AANNTTVTKV KRTRRSVPRD SPPQRSSIYR GVTRHRWTGR  60
YEAHLWDKNC WNETQNKKGR QGAYDDEEAA AHAYDLAALK YWGQDTILNF PVSTYPKELK  120
EMEGQSREEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT  180
QEEAATAYDM AAIEYRGLNA VTNFDLSRYI KWLKPNGPNN SENSGQPNTT IEAKLPNVAR  240
NPIDHDRGLS FFHNLAYSPA ETMTTAQPRP TTATSALGLL LQSSKFKEMM EMTTATDLSS  300
QPELSTPQCT FPDDIQTYFD CQDSSSYAEG DDVIFSELNS FMTPMFQCDF TT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028952021.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-118AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A498HNS40.0A0A498HNS4_MALDO; Uncharacterized protein
STRINGXP_009360021.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-100ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]